PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G206900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HSF
Protein Properties Length: 486aa    MW: 53632 Da    PI: 4.8197
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G206900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.55.9e-351462362101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k++++++d+e+++++sws+ g+sf+v+d+ ef++++LpkyFkh+nf+SF+RQLn+YgFkkv+ ++         weF+++ F+ gkk+
  Prupe.7G206900.1.p 146 FLNKTFQVVDDPETNSVVSWSAAGQSFIVWDSYEFSRTLLPKYFKHNNFSSFIRQLNTYGFKKVDPDR---------WEFANEGFQGGKKH 227
                         9****************************************************************999.........************** PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                         ll++ikr+ 
  Prupe.7G206900.1.p 228 LLKNIKRRI 236
                         *******96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.7E-37142235IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.5E-33142235IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-59142235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-19146169IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.8E-31146235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-19184196IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340185209IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-19197209IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MVVPEGGGGC GGGDGGGGGR SRLPLSSATQ SPKPSNGLEE AENELNKATE EVAPAKEEQK  60
AVTFKGGNCD RSSSSSSSPA LPKPAKELFR IKEENIDVVI VDDDVDVDGG DDGNFNGGDG  120
GTFSSSSSMA LPKPMEGLHE AGPPPFLNKT FQVVDDPETN SVVSWSAAGQ SFIVWDSYEF  180
SRTLLPKYFK HNNFSSFIRQ LNTYGFKKVD PDRWEFANEG FQGGKKHLLK NIKRRIRYNK  240
QPTVGSVDST KTGLEAEIES LKKDQDFLKL EIMNLRQQQK YSQHQLTAVE QRIRNSECKN  300
QRMLFFLTKT ATNPTIVQKL MQKRVIKREL DGSDLRKRRR LPSVQVLESL RDWIDTSLSL  360
DCGSQLEEEL VPMQSVLAEQ VAEAKVAKQN EAPLPAPMID KSGNAVQDLK PHVMAGTGTE  420
DMPTAYHGMS ENFQVENVVF DEDEFEVDDS NFYQELEDLI GKPHDWSGYV SHCLMEQAGV  480
IGAMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-2414123612121Heat shock factor protein 1
5d5v_D1e-2414123621130Heat shock factor protein 1
5d5v_B1e-2414123621130Heat shock factor protein 1
5d5u_B1e-2414123621130Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228234LKNIKRR
2334340LRKRRRL
3335339RKRRR
4336340KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242372.10.0PREDICTED: heat stress transcription factor A-2-like
TrEMBLM5VVF50.0M5VVF5_PRUPE; Uncharacterized protein
STRINGPOPTR_0006s15050.11e-123(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106762938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.16e-81heat shock transcription factor A2